sci-biology/mothur: drop 1.48.0

Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>

sci-biology/mothur/Manifest

@@ -1,2 +1 @@
-DIST mothur-1.48.0.tar.gz 1652711 BLAKE2B 39e1d2a32a63d441267b4e0e739505bdcb3ab392c169c96d60e816dbd9fab6b92745e8a9eaae31062711f2de0130dae540bba34c6bd97e76a921711f58c11f65 SHA512 a43ef6a223238d40e51c15043360ba9cae86347affea2f1a4e365635fb0949981ad32001b88d4061a033b2a002e944df16923a0622a40bf061791f06143467e1
 DIST mothur-1.48.2.tar.gz 24702253 BLAKE2B 4342640e70f08763c4bc1605441a9526ef967bd5832d103db3095c470ea82c2c554dd03775e8ffdf02a983ee4dfdb43ba008dcf7ff19b99321a0204843f98710 SHA512 0c3496d08131d15db3933165eba832a135ca3bce8010e7a2b4a84802c91d6f5efa54711498148d7cc190420b75a94babf20d6c435a5e07c730924f1f3f966586

sci-biology/mothur/mothur-1.48.0.ebuild

@@ -1,54 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit flag-o-matic toolchain-funcs
-
-DESCRIPTION="A suite of algorithms for ecological bioinformatics"
-HOMEPAGE="https://mothur.org/"
-SRC_URI="https://github.com/mothur/mothur/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="amd64 ~x86"
-IUSE="boost gsl hdf5 mpi +readline"
-
-RDEPEND="
-	sci-biology/uchime
-	boost? ( dev-libs/boost:=[zlib] )
-	gsl? ( sci-libs/gsl:= )
-	hdf5? ( sci-libs/hdf5:=[cxx] )
-	mpi? ( virtual/mpi )
-"
-DEPEND="${RDEPEND}"
-
-PATCHES=(
-	"${FILESDIR}"/${PN}-1.48.0-build.patch
-)
-
-src_configure() {
-	use mpi && export CXX=mpicxx || tc-export CXX
-	use amd64 && append-cppflags -DBIT_VERSION
-}
-
-src_compile() {
-	# bug #862273
-	append-flags -fno-strict-aliasing
-	filter-lto
-
-	# USEBOOST - link with boost libraries. Must install boost. Allows the make.contigs command to read .gz files.
-	# USEHDF5 - link with HDF5cpp libraries. Must install HDF5. Allows the biom.info command to read Biom format 2.0.
-	# USEGSL - link with GNU Scientific libraries. Must install GSL. Allows the estimiator.single command to find diversity estimates.
-	emake \
-		USEBOOST=$(usex boost) \
-		USEHDF5=$(usex hdf5) \
-		USEGSL=$(usex gsl) \
-		USEMPI=$(usex mpi) \
-		USEREADLINE=$(usex readline) \
-		OPTIMIZE=no
-}
-
-src_install() {
-	dobin mothur
-}